http://dk.archive.ubuntu.com/bioconductor/packages/2.14/bioc/manuals/GSVA/man/GSVA.pdf Web10 jun. 2024 · GSVA function to calculate ssGSEA score. I'm trying to run an R code for calculating the ssGSEA score between a gene expression dataset and a gene list. …
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WebIn general terms, PLAGE and z-score are parametric and should perform well with close-to-Gaussian expression profiles, and ssGSEA and GSVA are non-parametric and more … http://dk.archive.ubuntu.com/bioconductor-releases/3.9/bioc/manuals/oppar/man/oppar.pdf bose サウンドバー 700 有線接続
[BioC] Bug in GSVA with methods other than default?
Webhi Jonathan, i'm cc'ing your email to Justin Guinney, who's the actual maintainer of GSVA and who developed that bootstrapping part, he should be able to clarify this. WebIn general terms, PLAGE and z-score are parametric and should perform well with close-to-Gaussian expression profiles, and ssGSEA and GSVA are non-parametric and more robust to departures of Gaussianity in gene expression data. ADD COMMENT • link 2.8 years ago Robert Castelo ★ 3.0k Traffic: 499 users visited in the last hour WebThe latter two standardize first expression profiles into z-scores over the samples and, in the case of zscore, it combines them together as their sum divided by the square-root of the size of the gene set, while in the case of plage they are used to calculate the singular value decomposition (SVD) over the genes in the gene set and use the … 壁掛け用テレビ